[InterMine Dev] uniprot and go-annotation failing?

Sierra Moxon staylor at cs.uoregon.edu
Thu Aug 27 16:31:39 BST 2009


Gene.symbol = \
   uniprot, \
   *

same question, I guess, I have zfin-identifiers configured first in 
zfinmine_priorities.properties, and only the text above in 
genomic_priorities.properties.  What's the difference in the two 
properties files?


On Thu, 27 Aug 2009, Julie Sullivan wrote:

> I see your Gene.primaryIdentifier priority.  What about Gene.symbol?  Maybe 
> you need to add a priority for that field.  That's the field that had 
> conflicting values, according to that stacktrace you sent.
>
> Sierra Moxon wrote:
>>> Gene.symbol seems to be the problem here.  What is your priority config 
>>> for that field?  eg:
>>> 
>>> Gene.symbol = \
>>>  zfin-identifiers, \
>>>  uniprot, \
>>>  *
>> 
>> in genomic_priorities.properties:
>> Gene.primaryIdentifier = \
>>   uniprot, \
>>   *
>> in zfinmine_priorities.properties:
>> Gene=zfin-identifiers,zfin_genotypes,zfin_expression,go-annotation,uniprot-zebrafish 
>> 
>> I'm guessing I need to add a zfin-identifiers line to 
>> genomic-priorities.properties?
>> 
>> One file is for columns, the other is for entire loads?
>> 
>> Sierra
>> 
>> 
>



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