[InterMine Dev] uniprot and go-annotation failing?

Julie Sullivan julie at flymine.org
Thu Aug 27 17:34:32 BST 2009


The priorities file used by the build system is "genomic_priorities.properties". 
  I don't think the zfinmine_priorities.properties file is used for anything, 
and can probably be deleted.

Sierra Moxon wrote:
> 
> Gene.symbol = \
>   uniprot, \
>   *
> 
> same question, I guess, I have zfin-identifiers configured first in 
> zfinmine_priorities.properties, and only the text above in 
> genomic_priorities.properties.  What's the difference in the two 
> properties files?
> 
> 
> On Thu, 27 Aug 2009, Julie Sullivan wrote:
> 
>> I see your Gene.primaryIdentifier priority.  What about Gene.symbol?  
>> Maybe you need to add a priority for that field.  That's the field 
>> that had conflicting values, according to that stacktrace you sent.
>>
>> Sierra Moxon wrote:
>>>> Gene.symbol seems to be the problem here.  What is your priority 
>>>> config for that field?  eg:
>>>>
>>>> Gene.symbol = \
>>>>  zfin-identifiers, \
>>>>  uniprot, \
>>>>  *
>>>
>>> in genomic_priorities.properties:
>>> Gene.primaryIdentifier = \
>>>   uniprot, \
>>>   *
>>> in zfinmine_priorities.properties:
>>> Gene=zfin-identifiers,zfin_genotypes,zfin_expression,go-annotation,uniprot-zebrafish 
>>>
>>> I'm guessing I need to add a zfin-identifiers line to 
>>> genomic-priorities.properties?
>>>
>>> One file is for columns, the other is for entire loads?
>>>
>>> Sierra
>>>
>>>
>>
> 



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