[InterMine Dev] SNP script - timing out
julie at flymine.org
Fri Aug 28 17:00:30 BST 2009
Can you test something for me?
In intermine/perl/lib/InterMine/Item.pm, comment out line 196:
This is the line setting the reverse reference for the item we're saving. We
don't need it as we have the original reference, we were keeping it to make the
XML more human readable, I think. The converter discards this reference anyway.
The idea is that the objects are being kept in memory (even though they are out
of scope) because an object you do have in scope has references to these
objects. So Perl never lets them go. Removing this reference hopefully will
That's the idea anyway.
Let me know how that works out.
More information about the dev