[InterMine Dev] SNP script - timing out
avallejos at mcw.edu
Fri Aug 28 18:26:15 BST 2009
I commented out that line, no change.
I commented out the line I added:
After that the Perl script holds at ~293MB of RAM.
From: dev-bounces at mail.intermine.org
[mailto:dev-bounces at mail.intermine.org] On Behalf Of Julie Sullivan
Sent: Friday, August 28, 2009 11:01 AM
To: dev at intermine.org
Subject: [InterMine Dev] SNP script - timing out
Can you test something for me?
In intermine/perl/lib/InterMine/Item.pm, comment out line 196:
This is the line setting the reverse reference for the item we're
don't need it as we have the original reference, we were keeping it to
XML more human readable, I think. The converter discards this reference
The idea is that the objects are being kept in memory (even though they
of scope) because an object you do have in scope has references to these
objects. So Perl never lets them go. Removing this reference hopefully
That's the idea anyway.
Let me know how that works out.
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