[InterMine Dev] Enrichment Widget

Vallejos, Andrew avallejos at mcw.edu
Tue Nov 3 20:32:52 GMT 2009


Julie,

I've attached the webconfig file.

> The widget query includes a constraint on ontology.  Can you verify
this 
>ontology is correct?  The DO one is 'Disease_Ontology' and the MP
ontology >reads 'MPheno.ontology'.  Maybe that dot should be an
underscore?

Where are you looking?

Thanks,

Andrew

-----Original Message-----
From: Julie Sullivan [mailto:julie at flymine.org] 
Sent: Tuesday, November 03, 2009 10:38 AM
To: Vallejos, Andrew
Cc: dev at intermine.org
Subject: Re: [InterMine Dev] Enrichment Widget

Andrew,

Can you double check (or send me) your webconfig entry for that widget?
Is it 
pointing to the correct loader?  Is the ontology correct?

The widget query includes a constraint on ontology.  Can you verify this

ontology is correct?  The DO one is 'Disease_Ontology' and the MP
ontology reads 
'MPheno.ontology'.  Maybe that dot should be an underscore?


Vallejos, Andrew wrote:
> I've attached two our RatMine's enrichment Loader scripts.  The
problem 
> is that the MP enrichment widget never processes any of the genes or 
> proteins.  (As in "Number of Genes in this list not analysed in the 
> widget" always equals the number of genes in the list).
> 
>  
> 
> The DO enrichment widget works properly.
> 
>  
> 
> There is nothing in the log files that I have been able to find.
> 
>  
> 
> Thanks,
> 
>  
> 
> Andrew
> 
>  
> 
> ======================
> 
> Andrew Vallejos
> 
> Web Developer II
> 
> Biotechnology and Bioengineering Center
> 
> Medical College of Wisconsin
> 
> 414-955-4104
> 
> avallejos at mcw.edu
> 
>  
> 
> 
>
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> 
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