[InterMine Dev] bioseg error message

Kalpana Karra kkarra at stanford.edu
Tue Nov 24 19:28:39 GMT 2009


  # in malariamine/dbmodel
   when I run
  > ant clean build-db

I see the following lines of ERROR..

Some version mismatch somewhere?? What do I need to check?

Thanks!
-Kalpana


 >grep 'ERROR' intermine.log

2009-11-24 11:20:26 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.Exon.transcripts
2009-11-24 11:20:26 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.Gene.UTRs
2009-11-24 11:20:26 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.Gene.CDSs
2009-11-24 11:20:26 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.Gene.publications
2009-11-24 11:20:26 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.Intron.transcripts
2009-11-24 11:20:27 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.Transcript.introns
2009-11-24 11:20:27 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.Transcript.exons
2009-11-24 11:20:27 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.Protein.CDSs
2009-11-24 11:20:27 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.Protein.transcripts
2009-11-24 11:20:27 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.InsertionSite.genes
2009-11-24 11:20:27 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.MRNA.UTRs
2009-11-24 11:20:27 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.SequenceVariant.genes
2009-11-24 11:20:27 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.Chromosome.features
2009-11-24 11:20:27 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.Chromosome.transcripts
2009-11-24 11:20:27 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.Chromosome.exons
2009-11-24 11:20:27 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.Chromosome.genes
2009-11-24 11:20:27 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.Chromosome.chromosomeBands
2009-11-24 11:20:27 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.Chromosome.chromosomalStructuralElements
2009-11-24 11:20:27 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.Chromosome.crossGenomeMatches
2009-11-24 11:20:27 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.Gene.exons
2009-11-24 11:20:27 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.LocatedSequenceFeature.overlappingFeatures
2009-11-24 11:20:27 ERROR  
org.intermine.modelproduction.xml.InterMineModelParser     -  
Deprecated "ordered" attribute on collection  
org.intermine.model.bio.Scaffold.crossGenomeMatches

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