[InterMine Dev] New Error Message

Vallejos, Andrew avallejos at mcw.edu
Mon Mar 14 14:47:57 GMT 2011


I'm trying to do an abbreviated build on DevRatMine and also configure
the new search function.

 

I got the following error message from Go Annoations source that I have
never seen before.

 

Given a ProxyReference, but id not in ID Map.

 

 

Here is the full stack:

starting command: ant -v -Dsource=go-annotation

 

 

BUILD FAILED

/home/intermine/build/intermine_current/imbuild/integrate.xml:54: The
following error occurred while executing this line:

/home/intermine/build/intermine_current/imbuild/source.xml:330:
java.lang.RuntimeException: Exception while dataloading - to allow
multiple errors, set the property "dataLoader.allowMultipleErrors" to
true

Problem while loading item identifier 8_74144 because

Given a ProxyReference, but id not in ID Map. Source object ID: 86835

        at
org.apache.tools.ant.ProjectHelper.addLocationToBuildException(ProjectHe
lper.java:508)

        at org.apache.tools.ant.taskdefs.Ant.execute(Ant.java:418)

        at
org.intermine.task.Integrate.performAction(Integrate.java:223)

        at
org.intermine.task.Integrate.performAction(Integrate.java:136)

        at org.intermine.task.Integrate.execute(Integrate.java:127)

        at
org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:288)

        at sun.reflect.GeneratedMethodAccessor1.invoke(Unknown Source)

        at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessor
Impl.java:25)

        at java.lang.reflect.Method.invoke(Method.java:597)

        at
org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:1
06)

        at org.apache.tools.ant.Task.perform(Task.java:348)

        at org.apache.tools.ant.Target.execute(Target.java:357)

        at org.apache.tools.ant.Target.performTasks(Target.java:385)

        at
org.apache.tools.ant.Project.executeSortedTargets(Project.java:1337)

        at org.apache.tools.ant.Project.executeTarget(Project.java:1306)

        at
org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecut
or.java:41)

        at
org.apache.tools.ant.Project.executeTargets(Project.java:1189)

        at org.apache.tools.ant.Main.runBuild(Main.java:758)

        at org.apache.tools.ant.Main.startAnt(Main.java:217)

        at org.apache.tools.ant.launch.Launcher.run(Launcher.java:257)

        at org.apache.tools.ant.launch.Launcher.main(Launcher.java:104)

Caused by:
/home/intermine/build/intermine_current/imbuild/source.xml:330:
java.lang.RuntimeException: Exception while dataloading - to allow
multiple errors, set the property "dataLoader.allowMultipleErrors" to
true

Problem while loading item identifier 8_74144 because

Given a ProxyReference, but id not in ID Map. Source object ID: 86835

        at
org.intermine.dataloader.ObjectStoreDataLoaderTask.execute(ObjectStoreDa
taLoaderTask.java:133)

        at
org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:288)

        at sun.reflect.GeneratedMethodAccessor91.invoke(Unknown Source)

        at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessor
Impl.java:25)

        at java.lang.reflect.Method.invoke(Method.java:597)

        at
org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:1
06)

        at org.apache.tools.ant.Task.perform(Task.java:348)

        at org.apache.tools.ant.Target.execute(Target.java:357)

        at org.apache.tools.ant.Target.performTasks(Target.java:385)

        at
org.apache.tools.ant.Project.executeSortedTargets(Project.java:1337)

        at
org.apache.tools.ant.helper.SingleCheckExecutor.executeTargets(SingleChe
ckExecutor.java:38)

        at
org.apache.tools.ant.Project.executeTargets(Project.java:1189)

        at org.apache.tools.ant.taskdefs.Ant.execute(Ant.java:416)

        ... 19 more

Caused by: java.lang.RuntimeException: Exception while dataloading - to
allow multiple errors, set the property "dataLoader.allowMultipleErrors"
to true

Problem while loading item identifier 8_74144 because

Given a ProxyReference, but id not in ID Map. Source object ID: 86835

        at
org.intermine.dataloader.ObjectStoreDataLoader.process(ObjectStoreDataLo
ader.java:164)

        at
org.intermine.dataloader.ObjectStoreDataLoader.process(ObjectStoreDataLo
ader.java:60)

        at
org.intermine.dataloader.ObjectStoreDataLoaderTask.execute(ObjectStoreDa
taLoaderTask.java:128)

        ... 31 more

Caused by: java.lang.IllegalArgumentException: Given a ProxyReference,
but id not in ID Map. Source object ID: 86835

        at
org.intermine.dataloader.IntegrationWriterAbstractImpl.getEquivalentObje
cts(IntegrationWriterAbstractImpl.java:146)

        at
org.intermine.dataloader.IntegrationWriterDataTrackingImpl.store(Integra
tionWriterDataTrackingImpl.java:257)

        at
org.intermine.dataloader.IntegrationWriterAbstractImpl.copyField(Integra
tionWriterAbstractImpl.java:343)

        at
org.intermine.dataloader.IntegrationWriterDataTrackingImpl.shortcut(Inte
grationWriterDataTrackingImpl.java:571)

        at
org.intermine.dataloader.IntegrationWriterDataTrackingImpl.store(Integra
tionWriterDataTrackingImpl.java:263)

        at
org.intermine.dataloader.IntegrationWriterAbstractImpl.store(Integration
WriterAbstractImpl.java:171)

        at
org.intermine.dataloader.ObjectStoreDataLoader.process(ObjectStoreDataLo
ader.java:146)

        ... 33 more

--- Nested Exception ---

/home/intermine/build/intermine_current/imbuild/source.xml:330:
java.lang.RuntimeException: Exception while dataloading - to allow
multiple errors, set the property "dataLoader.allowMultipleErrors" to
true

Problem while loading item identifier 8_74144 because

Given a ProxyReference, but id not in ID Map. Source object ID: 86835

        at
org.intermine.dataloader.ObjectStoreDataLoaderTask.execute(ObjectStoreDa
taLoaderTask.java:133)

        at
org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:288)

        at sun.reflect.GeneratedMethodAccessor91.invoke(Unknown Source)

        at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessor
Impl.java:25)

        at java.lang.reflect.Method.invoke(Method.java:597)

        at
org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:1
06)

        at org.apache.tools.ant.Task.perform(Task.java:348)

        at org.apache.tools.ant.Target.execute(Target.java:357)

        at org.apache.tools.ant.Target.performTasks(Target.java:385)

        at
org.apache.tools.ant.Project.executeSortedTargets(Project.java:1337)

        at
org.apache.tools.ant.helper.SingleCheckExecutor.executeTargets(SingleChe
ckExecutor.java:38)

        at
org.apache.tools.ant.Project.executeTargets(Project.java:1189)

        at org.apache.tools.ant.taskdefs.Ant.execute(Ant.java:416)

        at
org.intermine.task.Integrate.performAction(Integrate.java:223)

        at
org.intermine.task.Integrate.performAction(Integrate.java:136)

        at org.intermine.task.Integrate.execute(Integrate.java:127)

        at
org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:288)

        at sun.reflect.GeneratedMethodAccessor1.invoke(Unknown Source)

        at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessor
Impl.java:25)

        at java.lang.reflect.Method.invoke(Method.java:597)

        at
org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:1
06)

        at org.apache.tools.ant.Task.perform(Task.java:348)

        at org.apache.tools.ant.Target.execute(Target.java:357)

        at org.apache.tools.ant.Target.performTasks(Target.java:385)

        at
org.apache.tools.ant.Project.executeSortedTargets(Project.java:1337)

        at org.apache.tools.ant.Project.executeTarget(Project.java:1306)

        at
org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecut
or.java:41)

        at
org.apache.tools.ant.Project.executeTargets(Project.java:1189)

        at org.apache.tools.ant.Main.runBuild(Main.java:758)

        at org.apache.tools.ant.Main.startAnt(Main.java:217)

        at org.apache.tools.ant.launch.Launcher.run(Launcher.java:257)

        at org.apache.tools.ant.launch.Launcher.main(Launcher.java:104)

Caused by: java.lang.RuntimeException: Exception while dataloading - to
allow multiple errors, set the property "dataLoader.allowMultipleErrors"
to true

Problem while loading item identifier 8_74144 because

Given a ProxyReference, but id not in ID Map. Source object ID: 86835

        at
org.intermine.dataloader.ObjectStoreDataLoader.process(ObjectStoreDataLo
ader.java:164)

        at
org.intermine.dataloader.ObjectStoreDataLoader.process(ObjectStoreDataLo
ader.java:60)

        at
org.intermine.dataloader.ObjectStoreDataLoaderTask.execute(ObjectStoreDa
taLoaderTask.java:128)

        ... 31 more

Caused by: java.lang.IllegalArgumentException: Given a ProxyReference,
but id not in ID Map. Source object ID: 86835

        at
org.intermine.dataloader.IntegrationWriterAbstractImpl.getEquivalentObje
cts(IntegrationWriterAbstractImpl.java:146)

        at
org.intermine.dataloader.IntegrationWriterDataTrackingImpl.store(Integra
tionWriterDataTrackingImpl.java:257)

        at
org.intermine.dataloader.IntegrationWriterAbstractImpl.copyField(Integra
tionWriterAbstractImpl.java:343)

        at
org.intermine.dataloader.IntegrationWriterDataTrackingImpl.shortcut(Inte
grationWriterDataTrackingImpl.java:571)

        at
org.intermine.dataloader.IntegrationWriterDataTrackingImpl.store(Integra
tionWriterDataTrackingImpl.java:263)

        at
org.intermine.dataloader.IntegrationWriterAbstractImpl.store(Integration
WriterAbstractImpl.java:171)

        at
org.intermine.dataloader.ObjectStoreDataLoader.process(ObjectStoreDataLo
ader.java:146)

        ... 33 more

--- Nested Exception ---

java.lang.RuntimeException: Exception while dataloading - to allow
multiple errors, set the property "dataLoader.allowMultipleErrors" to
true

Problem while loading item identifier 8_74144 because

Given a ProxyReference, but id not in ID Map. Source object ID: 86835

        at
org.intermine.dataloader.ObjectStoreDataLoader.process(ObjectStoreDataLo
ader.java:164)

        at
org.intermine.dataloader.ObjectStoreDataLoader.process(ObjectStoreDataLo
ader.java:60)

        at
org.intermine.dataloader.ObjectStoreDataLoaderTask.execute(ObjectStoreDa
taLoaderTask.java:128)

        at
org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:288)

        at sun.reflect.GeneratedMethodAccessor91.invoke(Unknown Source)

        at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessor
Impl.java:25)

        at java.lang.reflect.Method.invoke(Method.java:597)

        at
org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:1
06)

        at org.apache.tools.ant.Task.perform(Task.java:348)

        at org.apache.tools.ant.Target.execute(Target.java:357)

        at org.apache.tools.ant.Target.performTasks(Target.java:385)

        at
org.apache.tools.ant.Project.executeSortedTargets(Project.java:1337)

        at
org.apache.tools.ant.helper.SingleCheckExecutor.executeTargets(SingleChe
ckExecutor.java:38)

        at
org.apache.tools.ant.Project.executeTargets(Project.java:1189)

        at org.apache.tools.ant.taskdefs.Ant.execute(Ant.java:416)

        at
org.intermine.task.Integrate.performAction(Integrate.java:223)

        at
org.intermine.task.Integrate.performAction(Integrate.java:136)

        at org.intermine.task.Integrate.execute(Integrate.java:127)

        at
org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:288)

        at sun.reflect.GeneratedMethodAccessor1.invoke(Unknown Source)

        at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessor
Impl.java:25)

        at java.lang.reflect.Method.invoke(Method.java:597)

        at
org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:1
06)

        at org.apache.tools.ant.Task.perform(Task.java:348)

        at org.apache.tools.ant.Target.execute(Target.java:357)

        at org.apache.tools.ant.Target.performTasks(Target.java:385)

        at
org.apache.tools.ant.Project.executeSortedTargets(Project.java:1337)

        at org.apache.tools.ant.Project.executeTarget(Project.java:1306)

        at
org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecut
or.java:41)

        at
org.apache.tools.ant.Project.executeTargets(Project.java:1189)

        at org.apache.tools.ant.Main.runBuild(Main.java:758)

        at org.apache.tools.ant.Main.startAnt(Main.java:217)

        at org.apache.tools.ant.launch.Launcher.run(Launcher.java:257)

        at org.apache.tools.ant.launch.Launcher.main(Launcher.java:104)

Caused by: java.lang.IllegalArgumentException: Given a ProxyReference,
but id not in ID Map. Source object ID: 86835

        at
org.intermine.dataloader.IntegrationWriterAbstractImpl.getEquivalentObje
cts(IntegrationWriterAbstractImpl.java:146)

        at
org.intermine.dataloader.IntegrationWriterDataTrackingImpl.store(Integra
tionWriterDataTrackingImpl.java:257)

        at
org.intermine.dataloader.IntegrationWriterAbstractImpl.copyField(Integra
tionWriterAbstractImpl.java:343)

        at
org.intermine.dataloader.IntegrationWriterDataTrackingImpl.shortcut(Inte
grationWriterDataTrackingImpl.java:571)

        at
org.intermine.dataloader.IntegrationWriterDataTrackingImpl.store(Integra
tionWriterDataTrackingImpl.java:263)

        at
org.intermine.dataloader.IntegrationWriterAbstractImpl.store(Integration
WriterAbstractImpl.java:171)

        at
org.intermine.dataloader.ObjectStoreDataLoader.process(ObjectStoreDataLo
ader.java:146)

        ... 33 more

 

======================

Andrew Vallejos

Web Developer II

Biotechnology and Bioengineering Center

Medical College of Wisconsin

414-955-4104

avallejos at mcw.edu

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