[InterMine Dev] Blank pubmed IDs in the database

Julie Sullivan julie at flymine.org
Thu Oct 13 15:05:00 BST 2011


I don't know why the Pombe file has bad pubmed IDs.  Maybe if you had the IDs 
you could send them to GO and ask them to update the bad entries?

On 13/10/11 14:55, James Blackshaw wrote:
> Hi,
> We've noticed while loading in publication information from Pubmed that about 50
> PubMed IDs don't refer to an actual Pubmed entry and in fact return an error
> when you search for them on NCBI. We've traced these to ones in the GO
> annotation source files. Is there any particular reason GO-annotation loads
> publications, or why it might have nonexistent ones?
>
> Eample like for S.pombe with a Pubmed ID that does not return any publication:
> UniProtKB P78794 cwf15 GO:0005681 PMID:118845903 IDA C Pre-mRNA-splicing factor
> cwc15 CWC15_SCHPO|cwf15|SPBC337.06c|O74817 protein taxon:284812 20060918
> GeneDB_Spombe
>
> -James
>
>
>
>
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