[InterMine Dev] cannot find superclass "org.intermine.model.bio.LocatedSequenceFeature"

Quang Trinh quang.trinh at gmail.com
Sun Oct 23 18:00:25 BST 2011


Hi Julie,
    Yes, replacing LocatedSequenceFeature with SequenceFeature works.

Thanks.

On Sat, Oct 22, 2011 at 8:03 PM,  <julie at flymine.org> wrote:
> LocatedSequenceFeature was renamed SequenceFeature in the InterMine 0.96
> release.  Try that instead?
>
>> Hi,
>>   I am going through on how to create a new data source (
>> http://intermine.org/wiki/SourceHowto ) and get this error when
>> building my database:
>> ....
>> Caused by: org.intermine.modelproduction.ModelMergerException: cannot
>> find superclass "org.intermine.model.bio.LocatedSequenceFeature" of
>> <class name="NewFeature" extends="LocatedSequenceFeature"
>> is-interface="true">
>>       <attribute name="confidence" type="java.lang.Double"/>
>>       <attribute name="identifier" type="java.lang.String"/>
>>       <reference name="protein" referenced-type="Protein"
>> reverse-reference="features"/>
>> </class>
>>
>>   It seems the build process failed because it couldn't find the
>> superclass "LocatedSequenceFeature".  Could someone tell me how to fix
>> this?
>>
>> Thanks,
>>
>> Q
>>
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>>
>
>



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