[InterMine Dev] Servlet exceptions

Julie Sullivan julie at flymine.org
Mon Sep 5 13:46:46 BST 2011


Hi Brian

I've checked in a fix.  Can you do an svn update, re-release your webapp, and 
let me know what happens?

Thanks!
Julie

On 29/08/11 19:40, Lewis, Brian Andrew wrote:
> After deploying a custom InterMine webapp in Tomcat (running on RHEL 6), whenever I try to search for a specific name, ID or keyword, I get an error page and the following shows up in the server log:
>
> Aug 29, 2011 2:29:49 PM org.apache.catalina.core.ApplicationDispatcher invoke
> SEVERE: Servlet.service() for servlet jsp threw exception
> javax.servlet.jsp.JspException: ServletException in '/model/attributeLinkDisplayer.jsp': File"/model/attributeLinkDisplayer.jsp" not found
>          at org.apache.struts.taglib.tiles.InsertTag$InsertHandler.doEndTag(InsertTag.java:921)
>          at org.apache.struts.taglib.tiles.InsertTag.doEndTag(InsertTag.java:460)
>          at org.apache.jsp.bagDisplayers_jsp._jspx_meth_tiles_005finsert_005f0(bagDisplayers_jsp.java:337)
>          at org.apache.jsp.bagDisplayers_jsp._jspx_meth_c_005fif_005f1(bagDisplayers_jsp.java:283)
>          at org.apache.jsp.bagDisplayers_jsp._jspx_meth_c_005fforEach_005f1(bagDisplayers_jsp.java:245)
>          at org.apache.jsp.bagDisplayers_jsp._jspx_meth_c_005fif_005f0(bagDisplayers_jsp.java:213)
>          at org.apache.jsp.bagDisplayers_jsp._jspx_meth_c_005fforEach_005f0(bagDisplayers_jsp.java:179)
>          at org.apache.jsp.bagDisplayers_jsp._jspService(bagDisplayers_jsp.java:92)
>         at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
>          at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
>          at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:377)
>          at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:313)
>          at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:260)
>          at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
>          at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
>          at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
>          at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:646)
>          at org.apache.catalina.core.ApplicationDispatcher.doInclude(ApplicationDispatcher.java:551)
>          at org.apache.catalina.core.ApplicationDispatcher.include(ApplicationDispatcher.java:488)
>          at org.apache.jasper.runtime.JspRuntimeLibrary.include(JspRuntimeLibrary.java:968)
>          at org.apache.jasper.runtime.PageContextImpl.include(PageContextImpl.java:621)
>          at org.apache.struts.tiles.TilesUtilImpl.doInclude(TilesUtilImpl.java:101)
>          at org.apache.struts.tiles.TilesUtil.doInclude(TilesUtil.java:137)
>          at org.apache.struts.taglib.tiles.InsertTag.doInclude(InsertTag.java:758)
>          at org.apache.struts.taglib.tiles.InsertTag$InsertHandler.doEndTag(InsertTag.java:890)
>          at org.apache.struts.taglib.tiles.InsertTag.doEndTag(InsertTag.java:460)
>          at org.apache.jsp.bagDetails_jsp._jspx_meth_tiles_005finsert_005f5(bagDetails_jsp.java:2359)
>          at org.apache.jsp.bagDetails_jsp._jspx_meth_c_005fwhen_005f0(bagDetails_jsp.java:406)
>          at org.apache.jsp.bagDetails_jsp._jspx_meth_c_005fchoose_005f0(bagDetails_jsp.java:312)
>          at org.apache.jsp.bagDetails_jsp._jspService(bagDetails_jsp.java:192)
>          at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
>          at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
>          at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:377)
>          at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:313)
>          at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:260)
>          at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
>          at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
>          at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
>          at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:646)
>          at org.apache.catalina.core.ApplicationDispatcher.doInclude(ApplicationDispatcher.java:551)
>          at org.apache.catalina.core.ApplicationDispatcher.include(ApplicationDispatcher.java:488)
>          at org.apache.jasper.runtime.JspRuntimeLibrary.include(JspRuntimeLibrary.java:968)
>          at org.apache.jasper.runtime.PageContextImpl.include(PageContextImpl.java:621)
>          at org.apache.struts.tiles.TilesUtilImpl.doInclude(TilesUtilImpl.java:101)
>          at org.apache.struts.tiles.TilesUtil.doInclude(TilesUtil.java:137)
>          at org.apache.struts.taglib.tiles.InsertTag.doInclude(InsertTag.java:758)
>          at org.apache.struts.taglib.tiles.InsertTag$InsertHandler.doEndTag(InsertTag.java:890)
>          at org.apache.struts.taglib.tiles.InsertTag.doEndTag(InsertTag.java:460)
>          at org.apache.jsp.layout_jsp._jspx_meth_tiles_005fget_005f1(layout_jsp.java:860)
>          at org.apache.jsp.layout_jsp._jspService(layout_jsp.java:204)
>          at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
>          at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
>          at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:377)
>          at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:313)
>          at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:260)
>          at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
>          at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
>          at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
>          at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:646)
>          at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:436)
>          at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:374)
>          at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:302)
>          at org.apache.struts.action.RequestProcessor.doForward(RequestProcessor.java:1056)
>          at org.apache.struts.tiles.TilesRequestProcessor.doForward(TilesRequestProcessor.java:261)
>          at org.apache.struts.tiles.TilesRequestProcessor.processTilesDefinition(TilesRequestProcessor.java:237)
>          at org.apache.struts.tiles.TilesRequestProcessor.internalModuleRelativeForward(TilesRequestProcessor.java:339)
>          at org.apache.struts.action.RequestProcessor.processForward(RequestProcessor.java:553)
>          at org.apache.struts.action.RequestProcessor.process(RequestProcessor.java:211)
>          at org.apache.struts.action.ActionServlet.process(ActionServlet.java:1164)
>          at org.apache.struts.action.ActionServlet.doGet(ActionServlet.java:397)
>          at javax.servlet.http.HttpServlet.service(HttpServlet.java:617)
>          at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
>          at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
>          at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
>          at com.planetj.servlet.filter.compression.CompressingFilter.doFilter(CompressingFilter.java:270)
>          at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
>          at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
>          at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
>          at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
>          at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
>          at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
>          at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
>          at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298)
>          at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:852)
>          at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:588)
>          at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489)
>          at java.lang.Thread.run(Thread.java:662)
>
>
> Also, if I try to click on a list I've created, I get a blank page and this error in the server logs:
>
> Aug 29, 2011 2:38:50 PM org.apache.catalina.core.StandardWrapperValve invoke
> SEVERE: Servlet.service() for servlet action threw exception
> javax.servlet.jsp.JspException: ServletException in 'bagDetails.jsp': javax.servlet.jsp.JspException: ServletException in '/bagDisplayers.jsp': javax.servlet.jsp.JspException: ServletException in '/model/attributeLinkDisplayer.jsp': File"/model/attributeLinkDisplayer.jsp" not found
>          at org.apache.struts.taglib.tiles.InsertTag$InsertHandler.doEndTag(InsertTag.java:921)
>          at org.apache.struts.taglib.tiles.InsertTag.doEndTag(InsertTag.java:460)
>          at org.apache.jsp.layout_jsp._jspx_meth_tiles_005fget_005f1(layout_jsp.java:860)
>          at org.apache.jsp.layout_jsp._jspService(layout_jsp.java:204)
>         at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
>          at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
>          at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:377)
>          at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:313)
>          at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:260)
>          at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
>          at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
>          at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
>          at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:646)
>          at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:436)
>          at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:374)
>          at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:302)
>          at org.apache.struts.action.RequestProcessor.doForward(RequestProcessor.java:1056)
>          at org.apache.struts.tiles.TilesRequestProcessor.doForward(TilesRequestProcessor.java:261)
>          at org.apache.struts.tiles.TilesRequestProcessor.processTilesDefinition(TilesRequestProcessor.java:237)
>          at org.apache.struts.tiles.TilesRequestProcessor.internalModuleRelativeForward(TilesRequestProcessor.java:339)
>          at org.apache.struts.action.RequestProcessor.processForward(RequestProcessor.java:553)
>          at org.apache.struts.action.RequestProcessor.process(RequestProcessor.java:211)
>          at org.apache.struts.action.ActionServlet.process(ActionServlet.java:1164)
>          at org.apache.struts.action.ActionServlet.doGet(ActionServlet.java:397)
>          at javax.servlet.http.HttpServlet.service(HttpServlet.java:617)
>          at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
>          at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
>          at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
>          at com.planetj.servlet.filter.compression.CompressingFilter.doFilter(CompressingFilter.java:270)
>          at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
>          at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
>          at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
>          at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
>          at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
>          at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
>          at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
>          at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:
>
>
> Any clue as to what might be causing these issues?
>
> Thanks,
> ~ Brian
>
>
>
>
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