[InterMine Dev] Error downloading data via perl script

julie at flymine.org julie at flymine.org
Thu Sep 8 17:11:08 BST 2011


Can you try with a lowercase p?  I think it's case sensitive

http://intermine.org/browser/branches/intermine_0_97/bio/scripts/DataDownloader/lib/DataDownloader/Source


> Sorry, I don't know why I put that in there.  It's still dying after I
> issue the correct  command, though:
>
>
>
> # perl bin/download_data -e nntcmine Interpro
>
> Sep 08 11:22:29 [ERROR ] Failed to load source InterPro: Can't locate
> DataDownloader/Source/InterPro.pm in @INC (@INC contains: bin/../lib
> /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl
> /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at (eval
> 1135) line 3.
>
>
>
> I checked my perl modules -
>
>
>
> [root at in-mdep-biosrh1 DataDownloader]# instmodsh
>
> Available commands are:
>
>    l            - List all installed modules
>
>    m <module>   - Select a module
>
>    q            - Quit the program
>
> cmd? l
>
> Installed modules are:
>
>    AppConfig
>
>    B::Hooks::EndOfScope
>
>    Bio
>
>    CPAN::Meta
>
>    CPAN::Meta::YAML
>
>    Carp::Clan
>
>    Class::Factory::Util
>
>    Class::Load
>
>    Class::Singleton
>
>    Compress::Raw::Bzip2
>
>    Compress::Raw::Zlib
>
>    Data::Dump
>
>    Data::OptList
>
>    DataDownloader
>
>
>
> So it looks like everything should be working correctly.
>
>
>
> Message: 4
>
> Date: Thu, 08 Sep 2011 15:55:00 +0100
>
> From: Julie Sullivan <julie at flymine.org<mailto:julie at flymine.org>>
>
> To: "dev at intermine.org<mailto:dev at intermine.org>"
> <dev at intermine.org<mailto:dev at intermine.org>>
>
> Subject: Re: [InterMine Dev] Error downloading data via perl script
>
> Message-ID:
> <4E68D744.6040304 at flymine.org<mailto:4E68D744.6040304 at flymine.org>>
>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
>
>
>
>> Well, I was able to get farther this time after creating the
>> nntcmine.yml file in the config directory.
>
>
>
> Great!
>
>
>
>> When I run the command: perl bin/download_data -e nntc_data InterPro I
>> get the following error:
>
>
>
> Where did "nntc_data" come from?
>
>
>




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