[InterMine Dev] bioseg start > end error

Dr. Intikhab Alam intikhab.alam at kaust.edu.sa
Tue Feb 28 13:36:51 GMT 2012


Hi,

I am loading my objects from an xml source, all goes fine but the postprocess create-bioseg-location-index fails with the following error:

BUILD FAILED
/home/intikhab/biosoft/intermine_0_98/imbuild/postprocess.xml:31: error running PostProcessTask (action: create-bioseg-location-index)
…
... 17 more
Caused by: Operation was:create-bioseg-location-index
at org.intermine.bio.postprocess.PostProcessOperationsTask.execute(PostProcessOperationsTask.java:293)
... 22 more
Caused by: org.postgresql.util.PSQLException: ERROR: bad bioseg representation
  Detail: lower limit of range greater than upper


I explicitly check in my script, that produces the objects in xml, to throw an error and die if and start value is > end value before I fill any of the 'Location'. My script does not show any errors.


Any ideas to locate what could be the problem?

Regards,

Intikhab


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