[InterMine Dev] bioseg lower limit of range greater than upper

Dr. Intikhab Alam intikhab.alam at kaust.edu.sa
Wed Feb 29 12:10:11 GMT 2012


It seems these are all intergenic regions, computed by post-processing,

             802 |           801 | 1      | 62000128 |  62000127 |
57000933 | org.intermine.model.bio.Location |                     |      0
|          |          |           |            |
| intergenic_region_chrAAA833M15Contig:30_802..801    |
|      | 62000127 |             |       |     57000933 |
62000128 |   57000000 |   63001344 |
  | org.intermine.model.bio.IntergenicRegion



I have not produced any intergenicRegion items in my source.

May be I stop using post-processing for intergenic regions for the moment.

Thanks for your help.

Regards,

Intikhab



On 2/29/12 12:02 PM, "Richard Smith" <richard at flymine.org> wrote:

>select * from location l, sequencefeature f where l.intermine_start >
>l.intermine_end and l.featureid = f.id;




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