[InterMine Dev] Go-annotation parser

julie at flymine.org julie at flymine.org
Fri Jun 22 12:12:34 BST 2012


Sorry for the delay James!  I'm not in the office this week so I've fallen
a bit behind.

Do you load GO from UniProt or do you have a separate GO source?

> This is currently the only problem holding up my re-release. I don't
> think it's connected to the new uniprot format as we are using a version
> from last year at the moment. The go_annotation and all_go_annotation
> tables are filled, but the respective go_annotationprotein tables are
> empty.
>
> -James
>
> On 15/06/2012 17:06, James Blackshaw wrote:
>> Hi,
>> for some reason the Go-annotation parser isn't always creating links
>> from protein->goannotation. It worked the last time I ran an
>> integration once I'd ran summarise-objectstore in postprocess, but not
>> this time. I haven't changed the go-annoation source at all. Are there
>> any other factors I'm not considering here?
>>
>> -James
>
>
>
> _______________________________________________
> dev mailing list
> dev at intermine.org
> http://mail.intermine.org/cgi-bin/mailman/listinfo/dev
>
>




More information about the dev mailing list