[InterMine Dev] biopax data visulization

Benjamin Hitz hitz at stanford.edu
Thu Mar 15 17:56:38 GMT 2012


On Mar 15, 2012, at 10:25 AM, Benjamin Hitz wrote:

> Just interrupting here but:
> 1) pathways SHOULD be modeled as paths.

Sorry GRAPHS, typo.

> 2) Although as graphs they have sub-graphs, essentially they are Graphs of BioMolecules ("Genes" but really proteins and/or RNAs... and can be expanded to DNA regulatory elements)  and Metabolites with Chemical Reactions as edges.
> 
> Ben
> 

--
Ben Hitz 
Senior Scientific Programmer ** Saccharomyces Genome Database ** GO Consortium
Stanford University ** hitz at stanford.edu







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