[InterMine Dev] Homologene converter?

Benjamin Hitz hitz at stanford.edu
Fri Mar 16 17:31:08 GMT 2012


Panther?  That is what GO is moving to.

> 
> 
> On 16/03/12 10:47, Joel Richardson wrote:
>> 
>> Is there a converter for Homologene?
> 
> No but I can write one!  I looked at a data file briefly a few years ago but it wasn't clear to me how to model the data.  Can you send me information on which data file you are loading and how you think it should be modeled?
> 
> Also, is there a consensus on the preferred source of orthologues?
>> 
> 
> No, I think that's going to be a topic of discussion at the annual meeting. Currently we in Cambridge are using Ensembl Compara because TreeFam hasn't updated since 2009.
> 
>> Thanks,
>> Joel
>> 
>> 
>> 
>> 
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--
Ben Hitz 
Senior Scientific Programmer ** Saccharomyces Genome Database ** GO Consortium
Stanford University ** hitz at stanford.edu







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