[InterMine Dev] Homologene converter?

Todd Harris todd at wormbase.org
Fri Mar 16 17:47:40 GMT 2012


I second on Panther.

But why settle on a single algorithm? It's useful to cross-correlate approaches.

Todd

On Mar 16, 2012, at 11:31 AM, Benjamin Hitz wrote:

> 
> Panther?  That is what GO is moving to.
> 
>> 
>> 
>> On 16/03/12 10:47, Joel Richardson wrote:
>>> 
>>> Is there a converter for Homologene?
>> 
>> No but I can write one!  I looked at a data file briefly a few years ago but it wasn't clear to me how to model the data.  Can you send me information on which data file you are loading and how you think it should be modeled?
>> 
>> Also, is there a consensus on the preferred source of orthologues?
>>> 
>> 
>> No, I think that's going to be a topic of discussion at the annual meeting. Currently we in Cambridge are using Ensembl Compara because TreeFam hasn't updated since 2009.
>> 
>>> Thanks,
>>> Joel
>>> 
>>> 
>>> 
>>> 
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>> 
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> 
> --
> Ben Hitz 
> Senior Scientific Programmer ** Saccharomyces Genome Database ** GO Consortium
> Stanford University ** hitz at stanford.edu
> 
> 
> 
> 
> 
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