[InterMine Dev] Adding XML properties to GFF3 sources

Julie Sullivan julie at flymine.org
Thu Nov 29 09:55:07 GMT 2012


The values from the project XML file are passed to 
org.intermine.bio.task.GFF3ConverterTask which then calls the converter to parse 
the files.

On 28/11/12 19:18, JD Wong wrote:
> Hi friends,
>
> I'm trying to modify the packaged GFF3converter to only store data types
> specified in the project XML.  In a mailing list
> post<http://mail.intermine.org/pipermail/dev/2011-July/000920.html>it
> was mentioned that converters have access to xml properties through
> setters.  GFF3 sources have many
> properties<http://intermine.readthedocs.org/en/latest/database/data-sources/library/gff/#project-xml>,
> yet org.intermine.bio.dataconversion.GFF3Converter.java has none of these
> setters.  Does anyone mind describing how properties are passed into
> source-handling code and what classes are involved?
>
> Thanks!
> -JD
>
>
>
>
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