[InterMine Dev] Adding XML properties to GFF3 sources
jdmswong at gmail.com
Thu Nov 29 21:11:43 GMT 2012
I'm trying to set up my own values to pass. I've created a property in the
project XML and a complementary setter in GFF3ConverterTask to handle this
new property, but this function never gets called. Do you know if there
are any more steps I need to take?
I can access these properties for the converter on a custom-file source,
but it looks as if GFF3ConverterTask properties are handled differently.
On Thu, Nov 29, 2012 at 4:55 AM, Julie Sullivan <julie at flymine.org> wrote:
> The values from the project XML file are passed to org.intermine.bio.task.
> **GFF3ConverterTask which then calls the converter to parse the files.
> On 28/11/12 19:18, JD Wong wrote:
>> Hi friends,
>> I'm trying to modify the packaged GFF3converter to only store data types
>> specified in the project XML. In a mailing list
>> was mentioned that converters have access to xml properties through
>> setters. GFF3 sources have many
>> yet org.intermine.bio.**dataconversion.GFF3Converter.**java has none of
>> setters. Does anyone mind describing how properties are passed into
>> source-handling code and what classes are involved?
>> dev mailing list
>> dev at intermine.org
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