[InterMine Dev] Adding XML properties to GFF3 sources
julie at flymine.org
Fri Nov 30 10:35:30 GMT 2012
You need to update the GFF3 task here:
On 29/11/12 21:11, JD Wong wrote:
> Thanks Julie,
> I'm trying to set up my own values to pass. I've created a property in the
> project XML and a complementary setter in GFF3ConverterTask to handle this
> new property, but this function never gets called. Do you know if there
> are any more steps I need to take?
> I can access these properties for the converter on a custom-file source,
> but it looks as if GFF3ConverterTask properties are handled differently.
> On Thu, Nov 29, 2012 at 4:55 AM, Julie Sullivan<julie at flymine.org> wrote:
>> The values from the project XML file are passed to org.intermine.bio.task.
>> **GFF3ConverterTask which then calls the converter to parse the files.
>> On 28/11/12 19:18, JD Wong wrote:
>>> Hi friends,
>>> I'm trying to modify the packaged GFF3converter to only store data types
>>> specified in the project XML. In a mailing list
>>> was mentioned that converters have access to xml properties through
>>> setters. GFF3 sources have many
>>> yet org.intermine.bio.**dataconversion.GFF3Converter.**java has none of
>>> setters. Does anyone mind describing how properties are passed into
>>> source-handling code and what classes are involved?
>>> dev mailing list
>>> dev at intermine.org
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