[InterMine Dev] beta release - InterMine 1.1

Christian Pich cmpich at zfin.org
Tue Oct 23 20:27:25 BST 2012


Hi,

I encountered the following problem:

It seems that widget displaying numbers of genes (or bars) have problems,
e.g. if I create a list ('pich test' on beta.flymine.org) and click on 
any of the Matches-link in the
publication enrichment or pathway enrichment or BDGP Expression patterns 
a little popup comes up with a preview list of genes.
When I click on the button 'View results' I get a new tab with an 
exception stating the URL /betarun.do
is not available. I tried Chrome and Firefox.

Christian

popup URL:

http://beta.flymine.org/betarun.do?query=%3Cquery%20model=%22genomic%22%20view=%22Gene.primaryIdentifier%20Gene.secondaryIdentifier%20Gene.name%20Gene.organism.name%20Gene.mRNAExpressionResults.stageRange%20Gene.mRNAExpressionResults.expressed%22%20constraintLogic=%22A%20and%20B%20and%20C%22%20%3E%3Cconstraint%20path=%22Gene%22%20op=%22IN%22%20code=%22A%22%20value=%22Gene%20list%20for%20D.%20melanogaster%2023%20Oct%202012%2012.25%22%20/%3E%3Cconstraint%20path=%22Gene.mRNAExpressionResults.stageRange%22%20op=%22=%22%20code=%22B%22%20value=%22stage%2011-12%20(BDGP%20in%20situ)%22%20/%3E%3Cconstraint%20path=%22Gene.mRNAExpressionResults.expressed%22%20op=%22=%22%20code=%22C%22%20value=%22true%22%20/%3E%3C/query%3E


On 10/23/12 9:50 AM, Julie Sullivan wrote:
> InterMine 1.1 is now available for beta testers!
>
> In this release, we have lots of new features. You can now change the 
> background distribution for enrichment widgets, users can share lists 
> and a mine can have multiple "super users". We've added several new 
> homologue data converters, and report widgets are now embeddable into 
> any HTML page.
>
> See here for the full list: http://intermine.org/wiki/ReleaseNotes
>
> You can test some of the new features here:
>
>     http://beta.flymine.org
>
> Note we have some model changes in this release for GO and 
> interactions. You can release a new webapp with the 1.1 code but the 
> interactions widget (for example) won't work correctly until you run a 
> new build. Also your templates will probably break.
>
> Upgrade instructions are here:
>
>     http://intermine.org/wiki/UpgradeInterMine
>
> The release date for InterMine 1.1 is (tentatively) set for 5 November.
>
> Thanks!
> Julie + the InterMine team
>
>
> _______________________________________________
> dev mailing list
> dev at intermine.org
> http://mail.intermine.org/cgi-bin/mailman/listinfo/dev




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