[InterMine Dev] build-db-userprofile fails

Dr Intikhab Alam intikhab.alam at kaust.edu.sa
Fri Oct 26 12:58:15 BST 2012


Dear intermine help, we could not resolve the unable to construct query error c/o my email below, can u help?

Intikhab
-----Original Message-----
From: Dr Intikhab Alam
Sent:  24/10/2012, 16:12
To: dev at intermine.org
Subject: [InterMine Dev] build-db-userprofile fails

Dear Intermine,

I am seeing the following error when running ant build-db-userprofile in my webapp dir. This is a test on the latest intermien release.

-init-build-db:

-do-build-db-userprofile:
 [build-db] Our new url -> jdbc:postgresql://localhost/userprofile-cbrcredseamine
 [build-db] Our new url -> jdbc:postgresql://localhost/userprofile-cbrcredseamine

-load-default-templates:
[load-default-templates] Loading default templates and tags into profile intikhab.alam at kaust.edu.sa
[load-default-templates] java.lang.RuntimeException: Error retrieving the bag with bagId : null
[load-default-templates]        at org.intermine.api.bag.SharedBagManager.getSharedBags(SharedBagManager.java:161)
[load-default-templates]        at org.intermine.api.profile.Profile.getSharedBags(Profile.java:735)
[load-default-templates]        at org.intermine.api.search.UserRepository.populateSearchItems(UserRepository.java:67)
[load-default-templates]        at org.intermine.api.search.SearchRepository.<init>(SearchRepository.java:66)
[load-default-templates]        at org.intermine.api.search.UserRepository.<init>(UserRepository.java:28)
[load-default-templates]        at org.intermine.api.profile.Profile.<init>(Profile.java:108)
[load-default-templates]        at org.intermine.api.profile.Profile.<init>(Profile.java:141)
[load-default-templates]        at org.intermine.web.ProfileHandler.getProfile(ProfileHandler.java:110)
[load-default-templates]        at org.intermine.web.ProfileBinding.unmarshal(ProfileBinding.java:176)
[load-default-templates]        at org.intermine.web.task.LoadDefaultTemplatesTask.execute(LoadDefaultTemplatesTask.java:150)
[load-default-templates]        at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)
[load-default-templates]        at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)
[load-default-templates]        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[load-default-templates]        at java.lang.reflect.Method.invoke(Method.java:616)
[load-default-templates]        at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
[load-default-templates]        at org.apache.tools.ant.Task.perform(Task.java:348)
[load-default-templates]        at org.apache.tools.ant.Target.execute(Target.java:392)
[load-default-templates]        at org.apache.tools.ant.Target.performTasks(Target.java:413)
[load-default-templates]        at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399)
[load-default-templates]        at org.apache.tools.ant.Project.executeTarget(Project.java:1368)
[load-default-templates]        at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)
[load-default-templates]        at org.apache.tools.ant.Project.executeTargets(Project.java:1251)
[load-default-templates]        at org.apache.tools.ant.Main.runBuild(Main.java:811)
[load-default-templates]        at org.apache.tools.ant.Main.startAnt(Main.java:217)
[load-default-templates]        at org.apache.tools.ant.launch.Launcher.run(Launcher.java:280)
[load-default-templates]        at org.apache.tools.ant.launch.Launcher.main(Launcher.java:109)
[load-default-templates] Caused by: java.lang.NullPointerException
[load-default-templates]        at org.intermine.api.bag.SharedBagManager.getSharedBags(SharedBagManager.java:150)
[load-default-templates]        ... 25 more

BUILD FAILED
/home/cbrcmine/biosoft/intermine.20121024.1316hrs/intermine/imbuild/application.xml:88: java.lang.RuntimeException: java.lang.RuntimeException: Error retrieving the bag with bagId : null



What does this "Error retrieving the bag with bagId : null" mean and how can I resolve this, please.


Thanks,

Intikhab

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