[InterMine Dev] list upload question

Alex Kalderimis alex at intermine.org
Fri Aug 9 13:01:55 BST 2013


On Fri, Aug 09, 2013 at 11:57:26AM +0000, Joel Richardson wrote:
> 
> OK, thanks Alex.
> 
> BTW, the comments for issue #400 mention "wrong types" in the matched
> results. What does that mean?

That is just a relabelling for matches that are due to a conversion
(eg. a gene that matched due to a protein identifier being given,
where that gene codes for the given protein).

> 
> Joel
> 
> 
> --
> Joel E. Richardson, Ph.D.
> Sr. Research Scientist
> Mouse Genome Informatics
> The Jackson Laboratory
> 600 Main Street
> Bar Harbor, Maine 04609
> 207-288-6435
> joel.richardson at jax.org
> 
> 
> 
> 
> 
> On 8/9/13 7:44 AM, "Alex Kalderimis" <alex at intermine.org> wrote:
> 
> >You are absolutely right that this could be a lot clearer, and that is
> >exactly the issue that #400 is meant to address. With the holidays at
> >the moment, this is likely to be looked at in September at the
> >earliest.
> >
> >All best,
> >
> >Alex.
> >On Fri, Aug 09, 2013 at 11:08:12AM +0000, Joel Richardson wrote:
> >> Hi devs,
> >>
> >> A user asked the following questionŠ She uploaded a list of refseq ids
> >>and got back a list of genes. She then wanted to know which of the ids
> >>she uploaded went with which genes. The only thing I could suggest was
> >>to add in refseq ids as a column in the table. But that's nonspecific;
> >>if a gene has multiple refseqs ids, they all show up, not just the one
> >>that matched. Is there a better solution ?
> >>
> >> Actually, now I see issue #400 addresses this. Is there a time frame
> >>for this?
> >>
> >> Thanks!
> >>
> >> Joel
> >>
> >>
> >> --
> >> Joel E. Richardson, Ph.D.
> >> Sr. Research Scientist
> >> Mouse Genome Informatics
> >> The Jackson Laboratory
> >> 600 Main Street
> >> Bar Harbor, Maine 04609
> >> 207-288-6435
> >> joel.richardson at jax.org
> >>
> >> The information in this email, including attachments, may be
> >>confidential and is intended solely for the addressee(s). If you believe
> >>you received this email by mistake, please notify the sender by return
> >>email as soon as possible.
> >
> >> _______________________________________________
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> >> http://mail.intermine.org/cgi-bin/mailman/listinfo/dev
> >
> 
> 
> The information in this email, including attachments, may be confidential and is intended solely for the addressee(s). If you believe you received this email by mistake, please notify the sender by return email as soon as possible.



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