[InterMine Dev] Generic GFF3 source
thomastriplet at gmail.com
Fri Mar 1 17:17:02 GMT 2013
I've created a custom GFF source for a previous version of my project, but
I'd like to use the generic GFF3 source for InterMine v1.2, but I'm getting
the following error message:
/home/intermine/imbuild/integrate.xml:54: Error in project.xml: Can't find
directories for sources: 'gff3', looked in:
It seems that there's no GFF3 source. And the documentation is a bit
inconsistent on that matter: it says at first that you need to create a
specific data source, then it says it's optional.
Same on the page to create the GFF data source: it says that just creating
the data source will work as is, but I get the following error message (ran
build after creating the source and updating project.xml):
/home/intermine/imbuild/integrate.xml:54: The following error occurred
while executing this line:
/home/intermine/imbuild/library.xml:78: The following error occurred while
executing this line:
/home/intermine/bio/sources/csfg-aniger-gff/main/resources does not exist.
So is there a generic GFF source, or should I implement a custom one?
Thomas Triplet, Jr. Eng., Ph.D.
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