[InterMine Dev] Not able to see malariamine webpage

Fengyuan Hu fh293 at cam.ac.uk
Thu Mar 21 09:09:23 GMT 2013


On 21/03/13 04:48, it at reverseinformatics.com wrote:
> Hi,
>    In Malariamine1.1,  I changed Tomact version 7.0.28 to 7, now its 
> working successfully. In webpage every data's and visibilities was 
> working good.

That's good news.

> I get session error as an alert when loads the home page and 
> querybuilder also not working.

You can fix the session error by configuring your tomcat, see here - 
http://intermine.readthedocs.org/en/latest/system-requirements/software/tomcat/

> Already some data's contained in DB like Bioentity table in 
> database.In <http://database.In> webpage,If I click query 
> builder--->Select Data type to begin query(Displays some definition on 
> right side textbox)-->select , it will go on this url 
> "http://localhost:8080/malariamine/query.do <http://query.do>" and the 
> full page was empty.

My query builder works fine, have you checked the logs?

>
>
> Thanks and Regards,
> Manikandan
>
>
>
>
>     -------- Original Message --------
>     Subject: Re: Not able to see malariamine webpage
>     From: Fengyuan Hu <fh293 at cam.ac.uk <mailto:fh293 at cam.ac.uk>>
>     Date: Wed, March 20, 2013 6:38 am
>     To: it at reverseinformatics.com <mailto:it at reverseinformatics.com>
>
>     Ok, I just went through the tutorial with intermine 1.1 and Tomcat
>     and I reproduced your exception!
>
>     You need to modify your MINE.properties:
>
>     Change
>             webapp.tomcat.version=7.0.28
>
>     to
>             webapp.tomcat.version=7
>
>     Take a try?
>
>     On 20/03/13 12:10, it at reverseinformatics.com wrote:
>>     Hi sir,
>>
>>         We will wait for your response.
>>
>>     Regards,
>>     Manikandan
>>
>>
>>         -------- Original Message --------
>>         Subject: Re: Not able to see malariamine webpage
>>         From: Fengyuan Hu <fh293 at cam.ac.uk <mailto:fh293 at cam.ac.uk>>
>>         Date: Wed, March 20, 2013 4:47 am
>>         To: it at reverseinformatics.com <mailto:it at reverseinformatics.com>
>>
>>         So IM1.1 + tomcat7.0.28 is not working in your case...I will
>>         test.
>>
>>         On 20/03/13 11:41, it at reverseinformatics.com wrote:
>>>         Hi,
>>>
>>>           Now we are using Intermine 1.1  and Tomcat 7.0.28 version.
>>>
>>>         Regards,
>>>         Manikandan
>>>
>>>
>>>             -------- Original Message --------
>>>             Subject: Re: Not able to see malariamine webpage
>>>             From: Fengyuan Hu <fh293 at cam.ac.uk <mailto:fh293 at cam.ac.uk>>
>>>             Date: Wed, March 20, 2013 4:25 am
>>>             To: it at reverseinformatics.com
>>>             <mailto:it at reverseinformatics.com>
>>>
>>>             Hi Manikandan,
>>>
>>>             I just got some feedbacks from our developer who works
>>>             on the tomcat issues. She'd suggest to use InterMine 1.1
>>>             and above with Tomcat7. 7 is a bit different from 6 on
>>>             configrations. Which version of InterMIne are you on now?
>>>
>>>             On 20/03/13 10:48, it at reverseinformatics.com wrote:
>>>>
>>>>             Hi,
>>>>                 I changed portnumber:8080 in
>>>>             Tomcat7.0.28/config/server.xml  file
>>>>
>>>>             <Connector port="8080" protocol="HTTP/1.1"
>>>>               connectionTimeout="20000"
>>>>               redirectPort="8443"
>>>>               emptySessionPath="true" />
>>>>             and malariamine.property file on
>>>>             webapp.deploy.url=http://localhost:8080
>>>>             webapp.baseurl=http://localhost:8080
>>>>              Again the same previous error message was display in
>>>>             terminal window.
>>>>
>>>>             Thanks,
>>>>             Manikandan
>>>>
>>>>                 -------- Original Message --------
>>>>                 Subject: Re: Not able to see malariamine webpage
>>>>                 From: Fengyuan Hu <fh293 at cam.ac.uk
>>>>                 <mailto:fh293 at cam.ac.uk>>
>>>>                 Date: Wed, March 20, 2013 2:44 am
>>>>                 To: it at reverseinformatics.com
>>>>                 <mailto:it at reverseinformatics.com>
>>>>
>>>>                 Hi Manikandan,
>>>>
>>>>                 The old malaria war is working, you mean you can
>>>>                 see the home page now I assume? Then that's good news.
>>>>
>>>>                 Regarding to your exception and new properties. I
>>>>                 notice that you use port 9090 instead of 8080
>>>>                 (default), will you change it to 8080 and try?
>>>>
>>>>                 Cheers
>>>>                 Fengyuan
>>>>
>>>>                 On 20/03/13 09:26, it at reverseinformatics.com wrote:
>>>>>                 Hi sir,
>>>>>
>>>>>                     I  have changed tomcat 7.0.28,while I start up
>>>>>                 the server  and released  the webapps at  the
>>>>>                 runtime error message was displayed  in terminal
>>>>>                 as given below,Since i tried another option as
>>>>>                 pasted oldmalariamine.war(0.98)file directly to
>>>>>                 tomcat/config/ directory,its working.I think
>>>>>                 tomcat was working,but i may have error in
>>>>>                 malariamine.properties.Here i attached
>>>>>                 mymalariamine.properties
>>>>>                 Terminal Error Message:
>>>>>                 java.io <http://java.io>.IOException: Server
>>>>>                 returned HTTP response code: 403 for URL:
>>>>>                 http://localhost:9090/manager/deploy?path=%2Fmalariamine
>>>>>                     at sun.net
>>>>>                 <http://sun.net>.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1403)
>>>>>                     at
>>>>>                 org.apache.catalina.ant.AbstractCatalinaTask.execute(AbstractCatalinaTask.java:223)
>>>>>                     at
>>>>>                 org.apache.catalina.ant.DeployTask.execute(DeployTask.java:201)
>>>>>                     at
>>>>>                 org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:288)
>>>>>                     at
>>>>>                 sun.reflect.GeneratedMethodAccessor51.invoke(Unknown
>>>>>                 Source)
>>>>>                     at
>>>>>                 sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>>>>>                     at
>>>>>                 java.lang.reflect.Method.invoke(Method.java:616)
>>>>>                     at
>>>>>                 org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
>>>>>                     at
>>>>>                 org.apache.tools.ant.Task.perform(Task.java:348)
>>>>>                     at
>>>>>                 org.apache.tools.ant.Target.execute(Target.java:357)
>>>>>                     at
>>>>>                 org.apache.tools.ant.Target.performTasks(Target.java:385)
>>>>>                     at
>>>>>                 org.apache.tools.ant.Project.executeSortedTargets(Project.java:1337)
>>>>>                     at
>>>>>                 org.apache.tools.ant.Project.executeTarget(Project.java:1306)
>>>>>                     at
>>>>>                 org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)
>>>>>                     at
>>>>>                 org.apache.tools.ant.Project.executeTargets(Project.java:1189)
>>>>>                     at
>>>>>                 org.apache.tools.ant.Main.runBuild(Main.java:758)
>>>>>                     at
>>>>>                 org.apache.tools.ant.Main.startAnt(Main.java:217)
>>>>>                     at
>>>>>                 org.apache.tools.ant.launch.Launcher.run(Launcher.java:257)
>>>>>                     at
>>>>>                 org.apache.tools.ant.launch.Launcher.main(Launcher.java:104)
>>>>>                 ---------------------------------------
>>>>>                 Regards,
>>>>>                 Manikandan
>>>>
>>>
>>
>

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