[InterMine Dev] Other data loaders for Intermine

Jayaraman, Pushkala pjayaraman at mcw.edu
Fri Mar 22 12:38:46 GMT 2013


Thanks Julie, 
Another quick question would be this:

I've been creating dbsnp xml files and they are crazy huge. Is there a limit to how large a file intermine can upload? 

Pushkala

-----Original Message-----
From: Julie Sullivan [mailto:julie at flymine.org] 
Sent: Friday, March 22, 2013 3:53 AM
To: Jayaraman, Pushkala
Cc: dev at intermine.org
Subject: Re: [InterMine Dev] Other data loaders for Intermine

The ontology sources (DO and MP) refer to the sources that Andrew wrote.

The rest are located here:

https://github.com/intermine/experimental-sources

All of those are over 3 years old, so you'll likely have to update them if the data has changed. Hopefully they'll have README files, I don't have any documentation for them.


On 20/03/13 17:06, Jayaraman, Pushkala wrote:
> Hello,
> I was reading up on the Data Source Library section and found that there were certain loaders written by other intermine users.
> I was wondering how to view these loading scripts. Are they part of the repository?
> Need some help trying to figure out where these scripts might be located. Do let me know..
> Other loaders
> These loaders were written by InterMine users.
>
>    *   CHEBI
>    *   Disease ontology
>    *   haem-atlas
>    *   HGNC
>    *   HuGE
>    *   Mammalian phenotypes
>    *   pride
>    *   stitch
>    *   huge gwas
>
>
> Thanks,
> Pushkala Jayaraman
> Programmer/Analyst - Rat Genome Database Human and Molecular Genetics 
> Center Medical College of Wisconsin
> 414-955-2229
> http://rgd.mcw.edu
>
>
>
>
>
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