[InterMine Dev] Other data loaders for Intermine

Julie Sullivan julie at flymine.org
Fri Mar 22 14:37:25 GMT 2013


No, I don't know of a limit. Maybe you're about to find out! :D

Fengyuan - how big is the XML file that human mine loads?

On 22/03/13 12:38, Jayaraman, Pushkala wrote:
> Thanks Julie,
> Another quick question would be this:
>
> I've been creating dbsnp xml files and they are crazy huge. Is there a limit to how large a file intermine can upload?
>
> Pushkala
>
> -----Original Message-----
> From: Julie Sullivan [mailto:julie at flymine.org]
> Sent: Friday, March 22, 2013 3:53 AM
> To: Jayaraman, Pushkala
> Cc: dev at intermine.org
> Subject: Re: [InterMine Dev] Other data loaders for Intermine
>
> The ontology sources (DO and MP) refer to the sources that Andrew wrote.
>
> The rest are located here:
>
> https://github.com/intermine/experimental-sources
>
> All of those are over 3 years old, so you'll likely have to update them if the data has changed. Hopefully they'll have README files, I don't have any documentation for them.
>
>
> On 20/03/13 17:06, Jayaraman, Pushkala wrote:
>> Hello,
>> I was reading up on the Data Source Library section and found that there were certain loaders written by other intermine users.
>> I was wondering how to view these loading scripts. Are they part of the repository?
>> Need some help trying to figure out where these scripts might be located. Do let me know..
>> Other loaders
>> These loaders were written by InterMine users.
>>
>>     *   CHEBI
>>     *   Disease ontology
>>     *   haem-atlas
>>     *   HGNC
>>     *   HuGE
>>     *   Mammalian phenotypes
>>     *   pride
>>     *   stitch
>>     *   huge gwas
>>
>>
>> Thanks,
>> Pushkala Jayaraman
>> Programmer/Analyst - Rat Genome Database Human and Molecular Genetics
>> Center Medical College of Wisconsin
>> 414-955-2229
>> http://rgd.mcw.edu
>>
>>
>>
>>
>>
>> _______________________________________________
>> dev mailing list
>> dev at intermine.org
>> http://mail.intermine.org/cgi-bin/mailman/listinfo/dev
>



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