[InterMine Dev] Galaxy Export ...

Howie Motenko Howie.Motenko at jax.org
Thu Mar 28 16:58:09 GMT 2013


Hi Alex,

Yes, branding is important for MouseMine.  We would like a galaxy tool for MouseMine.
Just the other day we were demoing the galaxy feature for our PI's and they instantly noticed 'Flymine' listed rather than 'MouseMine'.


Gratefully,
Howie


From: Alex Kalderimis <alex at intermine.org<mailto:alex at intermine.org>>
Organization: InterMine
Date: Wednesday, March 27, 2013 3:04 PM
To: <dev at intermine.org<mailto:dev at intermine.org>>
Cc: "Jayaraman, Pushkala" <pjayaraman at mcw.edu<mailto:pjayaraman at mcw.edu>>, Howie Motenko <howie.motenko at jax.org<mailto:howie.motenko at jax.org>>
Subject: Re: [InterMine Dev] Galaxy Export ...


Currently the upload tool we are using in galaxy main just happens to be called flymine, but is completely generic. We didn't even write it I believe. It can, and should be renamed "intermine upload" or something similar, and I will speak to the Galaxy crew about that next week.



We should also be able to have tools for each group (although that does sound like a lot of pointless duplication). Let me know how important it is to get your branding up there.



All best,



Alex



On Wednesday 27 March 2013 18:54:56 Jayaraman, Pushkala wrote:

Hello,

I see in the box you’ve copied:



FlyMine ==> Flymine

Metabolic ==> Flymine

modMine ==> Flymine

Rat ==> [broken]

MouseMine ==> Flymine

YeastMine ==> YeastMine





Rat shows broken link..

Do let me know what I can do to fix this.. if this is an existing feature that just needs a little fixing I may be able to fix it so that it isn’t broken for you anymore..



Pushkala



From: dev-bounces at intermine.org<mailto:dev-bounces at intermine.org> [mailto:dev-bounces at intermine.org] On Behalf Of Howie Motenko
Sent: Wednesday, March 27, 2013 1:51 PM
To: dev at intermine.org<mailto:dev at intermine.org>
Subject: [InterMine Dev] Galaxy Export ...



We've got the Galaxy export up and running.  But a funny little thing happens.



First let me define (in my own words) the galaxy stages as represented in the history column (far right-hand side) …



 1. The data is queued to galaxy => a grey box with a title (currently 'Flymine')

 2. The data is processed by galaxy => a yellow box with a title of the data.

 3. The data is available [or an error] for galaxy's tools => a green box [red box for error].





Okay now here's the wiggy thing … During the first stage in the grey box the data is displayed "Flymine", though it comes from 'MouseMine'.  How can we change it to read 'MouseMine'?



As a point of reference:



Mine  ==> Grey titled displayed

---------------------------------------------

FlyMine ==> Flymine

Metabolic ==> Flymine

modMine ==> Flymine

Rat ==> [broken]

MouseMine ==> Flymine

YeastMine ==> YeastMine



And there's the interesting point YeastMine actually displays 'YeastMine' in the grey box.  We'd like to do that too.





Gratefully,

Howie



The information in this email, including attachments, may be confidential and is intended solely for the addressee(s). If you believe you received this email by mistake, please notify the sender by return email as soon as possible.



--

Software Developer

InterMine

Department of Genetics

University of Cambridge

The information in this email, including attachments, may be confidential and is intended solely for the addressee(s). If you believe you received this email by mistake, please notify the sender by return email as soon as possible.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.intermine.org/pipermail/dev/attachments/20130328/c5ce7c09/attachment-0001.html>


More information about the dev mailing list