[InterMine Dev] Galaxy Export ...

Alex Kalderimis alex at intermine.org
Thu Mar 28 17:04:42 GMT 2013


On Thursday 28 March 2013 16:58:09 Howie Motenko wrote:
> Hi Alex,
> 
> Yes, branding is important for MouseMine.  We would like a galaxy tool for
> MouseMine. Just the other day we were demoing the galaxy feature for our
> PI's and they instantly noticed 'Flymine' listed rather than 'MouseMine'.
> 

We will definitely get this sorted next week then.

> 
> Gratefully,
> Howie

Many thanks,

Alex
> 
> 
> From: Alex Kalderimis <alex at intermine.org<mailto:alex at intermine.org>>
> Organization: InterMine
> Date: Wednesday, March 27, 2013 3:04 PM
> To: <dev at intermine.org<mailto:dev at intermine.org>>
> Cc: "Jayaraman, Pushkala" <pjayaraman at mcw.edu<mailto:pjayaraman at mcw.edu>>,
> Howie Motenko <howie.motenko at jax.org<mailto:howie.motenko at jax.org>>
> Subject: Re: [InterMine Dev] Galaxy Export ...
> 
> 
> Currently the upload tool we are using in galaxy main just happens to be
> called flymine, but is completely generic. We didn't even write it I
> believe. It can, and should be renamed "intermine upload" or something
> similar, and I will speak to the Galaxy crew about that next week.
> 
> 
> 
> We should also be able to have tools for each group (although that does
> sound like a lot of pointless duplication). Let me know how important it is
> to get your branding up there.
> 
> 
> 
> All best,
> 
> 
> 
> Alex
> 
> 
> 
> On Wednesday 27 March 2013 18:54:56 Jayaraman, Pushkala wrote:
> 
> Hello,
> 
> I see in the box you’ve copied:
> 
> 
> 
> FlyMine ==> Flymine
> 
> Metabolic ==> Flymine
> 
> modMine ==> Flymine
> 
> Rat ==> [broken]
> 
> MouseMine ==> Flymine
> 
> YeastMine ==> YeastMine
> 
> 
> 
> 
> 
> Rat shows broken link..
> 
> Do let me know what I can do to fix this.. if this is an existing feature
> that just needs a little fixing I may be able to fix it so that it isn’t
> broken for you anymore..
> 
> 
> 
> Pushkala
> 
> 
> 
> From: dev-bounces at intermine.org<mailto:dev-bounces at intermine.org>
> [mailto:dev-bounces at intermine.org] On Behalf Of Howie Motenko Sent:
> Wednesday, March 27, 2013 1:51 PM
> To: dev at intermine.org<mailto:dev at intermine.org>
> Subject: [InterMine Dev] Galaxy Export ...
> 
> 
> 
> We've got the Galaxy export up and running.  But a funny little thing
> happens.
> 
> 
> 
> First let me define (in my own words) the galaxy stages as represented in
> the history column (far right-hand side) …
> 
> 
> 
>  1. The data is queued to galaxy => a grey box with a title (currently
> 'Flymine')
> 
>  2. The data is processed by galaxy => a yellow box with a title of the
> data.
> 
>  3. The data is available [or an error] for galaxy's tools => a green box
> [red box for error].
> 
> 
> 
> 
> 
> Okay now here's the wiggy thing … During the first stage in the grey box the
> data is displayed "Flymine", though it comes from 'MouseMine'.  How can we
> change it to read 'MouseMine'?
> 
> 
> 
> As a point of reference:
> 
> 
> 
> Mine  ==> Grey titled displayed
> 
> ---------------------------------------------
> 
> FlyMine ==> Flymine
> 
> Metabolic ==> Flymine
> 
> modMine ==> Flymine
> 
> Rat ==> [broken]
> 
> MouseMine ==> Flymine
> 
> YeastMine ==> YeastMine
> 
> 
> 
> And there's the interesting point YeastMine actually displays 'YeastMine' in
> the grey box.  We'd like to do that too.
> 
> 
> 
> 
> 
> Gratefully,
> 
> Howie
> 
> 
> 
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> 
> 
> 
> --
> 
> Software Developer
> 
> InterMine
> 
> Department of Genetics
> 
> University of Cambridge
> 
> The information in this email, including attachments, may be confidential
> and is intended solely for the addressee(s). If you believe you received
> this email by mistake, please notify the sender by return email as soon as
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