[InterMine Dev] Error on web app deployment

Paulo Nuin paulo.nuin at gmail.com
Mon Aug 3 07:56:43 BST 2015


Hi

In our attempt to have an updated version of WormMine, we are having trouble deploying the Tomcat web app. The error happens on some javac compilation steps:

[dependencies] warning: [options] bootstrap class path not set in conjunction with -source 1.6
[dependencies] /mnt/data/intermine/intermine/objectstore/main/src/org/intermine/codegen/JavaModelOutput.java:512: error: cannot find symbol
[dependencies] 			if (attr.isPrimitive() || attr.isNumeric()) {
[dependencies] 			                              ^
[dependencies]   symbol:   method isNumeric()
[dependencies]   location: variable attr of type AttributeDescriptor
[dependencies] /mnt/data/intermine/intermine/objectstore/main/src/org/intermine/modelproduction/ModelMerger.java:95: error: cannot find symbol
[dependencies]                     original.getVersion(), new HashSet<ClassDescriptor>(newClasses.values()));
[dependencies]                             ^
[dependencies]   symbol:   method getVersion()
[dependencies]   location: variable original of type Model
[dependencies] Note: /mnt/data/intermine/intermine/objectstore/main/src/org/intermine/objectstore/query/QueryField.java uses or overrides a deprecated API.
[dependencies] Note: Recompile with -Xlint:deprecation for details.
[dependencies] Note: Some input files use unchecked or unsafe operations.
[dependencies] Note: Recompile with -Xlint:unchecked for details.
[dependencies] 2 errors
[dependencies] 1 warning
     [null] Exiting /mnt/data/intermine/intermine/objectstore/main/build.xml.


The problems seem to be in attire.isNumeric and original.getVersion().

Any help is appreciated.

Thanks

Paulo

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