[InterMine Dev] sources for load expression data
pengchy at gmail.com
Tue Jul 21 02:02:15 BST 2015
Thank you for your reply. I want to construct our Mine data warehouse.
InterMine is a flexible and powerful database framework. Thank you for
your work on this project.
A question for the <model>_additions.xml, the content of the two files
from modmine/worm-expression-score and modmine/fly-expression-score both
do not define any models in the InterMine release. Could you please send
these two files to me as a reference?
Thank you and best wishes,
On 2015/7/20 18:08, sergio contrino wrote:
> dear Pengcheng,
> thank you for your suggestion. we could try to provide a
> (configurable) default loader. for the moment it should be feasible to
> adapt one of the example you mentioned for your needs. the 2 modmine
> ones are using data from a tab separated file, which i think is what
> you describe as table format.
> On 20/07/15 09:56, Pengcheng Yang wrote:
>> I have searched the mail list archive, the issues in github/intermine
>> and the related Mines sources file. Existed sources for expression data
>> are fly/flybase-expression, modmine/fly-expression-score,
>> modmine/worm-expression-score and ratmine_bio_sources/geo*. Is it
>> possible for InterMine provide a general source to load gene expression
>> data in table format. Related questions is to group samples, such as
>> tissues, developmental stages and other treatments.
>> Pengcheng Yang
>> dev mailing list
>> dev at intermine.org
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