[InterMine Dev] protein2ipr loader

sergio contrino sergio at modencode.org
Wed Jul 22 10:47:16 BST 2015

hi Pengcheng,
the source will be integrated in intermine 1.6, due in the autumn.
see ticket

you could use the implementation in araport,

or refer directly to the original one in targetmine


On 22/07/15 04:37, Pengcheng Yang wrote:
> Hi InterMiners,
> Following the InterMine documentation, I want to load the protein2ipr
> data, but the protein2ipr sources directory not exist.
> So I searched the intermine issues and found this thread
> https://github.com/intermine/intermine/issues/169, then redirected to
> the protein2ipr sources
> https://github.com/chenyian-nibio/targetmine/blob/targetmine/bio/sources/targetmine/protein2ipr.
> I have put the protein2ipr to the intermine/bio/sources directory and
> test with ant and found that the "package org.intermine.model.bio does
> not exist". It seems that this converter used not existed package
> org.intermine.model.bio. I also do not found this package in
> http://www.flymine.org/api/ and the intermine latest release.
> Just for your information and is there possible to integrate this
> sources into intermine in the future?
> Best,
> Pengcheng Yang
> _______________________________________________
> dev mailing list
> dev at intermine.org
> http://mail.intermine.org/cgi-bin/mailman/listinfo/dev

sergio contrino                  InterMine, University of Cambridge
https://sergiocontrino.github.io           http://www.intermine.org

More information about the dev mailing list