[InterMine Dev] protein2ipr loader
yangpc at biols.ac.cn
Wed Jul 22 15:21:08 BST 2015
Thank you for your reply and the information.
I have write a perl script to convert the protein2ipr table into xml
file following the model defined at
The data has been successfully loaded. Any problem will be posted to
this thread in the future.
On 2015/7/22 17:47, sergio contrino wrote:
> hi Pengcheng,
> the source will be integrated in intermine 1.6, due in the autumn.
> see ticket
> you could use the implementation in araport,
> or refer directly to the original one in targetmine
> On 22/07/15 04:37, Pengcheng Yang wrote:
>> Hi InterMiners,
>> Following the InterMine documentation, I want to load the protein2ipr
>> data, but the protein2ipr sources directory not exist.
>> So I searched the intermine issues and found this thread
>> https://github.com/intermine/intermine/issues/169, then redirected to
>> the protein2ipr sources
>> I have put the protein2ipr to the intermine/bio/sources directory and
>> test with ant and found that the "package org.intermine.model.bio does
>> not exist". It seems that this converter used not existed package
>> org.intermine.model.bio. I also do not found this package in
>> http://www.flymine.org/api/ and the intermine latest release.
>> Just for your information and is there possible to integrate this
>> sources into intermine in the future?
>> Pengcheng Yang
>> dev mailing list
>> dev at intermine.org
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