[InterMine Dev] problem when integrate intermine and jbrowse
yangpc at biols.ac.cn
Tue Jul 28 10:11:47 BST 2015
Dear Guillaume Cornut,
Great information. With your suggestion, I have loaded the data into
JBrowse. But there encountered an error says "error an error was
encountered when displaying this track .... RequestError: Unable to load
my jbrowse_conf.json like this:
On 2015/7/28 16:49, Guillaume CORNUT wrote:
> As a user of InterMine I have set up a Jbrowse integration too.
> On my intermine the data url is actually like this:
> http://<HOST>/<MINE>/service/jbrowse/config/<TAXON ID>
> So for you it should be something like:
> Like you said, you can use this data url on any JBrowse without
> Guillaume Cornut
> On 27/07/2015 09:31, Pengcheng Yang wrote:
>> Dear InterMine developers,
>> I have scrutinized this problem days but without any progress. Sorry
>> for my simple question.
>> I have set up My InterMine data warehouse and want to visualize it
>> using JBrowse following the instruction:
>> From this instruction, it is possible to visualize the data in
>> InterMine using JBrowse without any additional configuration, like
>> define the json file and prepare the raw data, isn't it?
>> In the instruction, the data url is designated by: "url":
>> However, what the value for malariamine for example, if malariamine
>> can be visited at http://localhost:8080/malariamine .
>> Many thanks!
>> Pengcheng Yang
>> dev mailing list
>> dev at intermine.org
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