[InterMine Dev] auto-generated python code

Kalpana Karra kkarra at stanford.edu
Thu May 14 16:37:48 BST 2015


Hi Julie,
I realized on seeing your response that I needed to update python module ‘intermine’. I was on an older version. Upgrading to latest version 1.09.05 fixed the problem.
Thanks!
-Kalpana

> On May 14, 2015, at 1:24 AM, Julie Sullivan <julie at flymine.org> wrote:
> 
> Hi Kalpana,
> 
> I just tried to execute the python script generated on this page:
> 
> http://yeastmine.yeastgenome.org/yeastmine/template.do?name=Gene_Transcript
> 
> And it worked. Is this error from your dev mine? Am I in the wrong place?
> 
> Julie
> 
> 
> 
> On 14/05/15 03:08, Kalpana Karra wrote:
>> From the template page, getting Python code and running it is giving me
>> the error below. It works fine with the pythin code from Results Table
>> which does not use get_template.
>> 
>> I am wondering why the error seems to indicate as though template name
>> is ‘xml’ instead of ‘Gene_Transcript’.
>> 
>> Thanks,
>> -Kalpana
>> 
>> 
>> ./transcript_template_form.py
>> Traceback (most recent call last):
>>   File "./transcript_template_form.py", line 20, in <module>
>>     template = service.get_template('Gene_Transcript')
>>   File
>> "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/intermine-1.00.00-py2.7.egg/intermine/webservice.py",
>> line 398, in get_template
>>     t = self.templates[name]
>>   File
>> "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/intermine-1.00.00-py2.7.egg/intermine/webservice.py",
>> line 277, in __getattribute__
>>     return object.__getattribute__(self, name)
>>   File
>> "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/intermine-1.00.00-py2.7.egg/intermine/webservice.py",
>> line 429, in templates
>>     sock = self.opener.open(self.root + self.TEMPLATES_PATH)
>>   File
>> "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/intermine-1.00.00-py2.7.egg/intermine/results.py",
>> line 558, in open
>>     return urllib.FancyURLopener.open(self, url, data)
>>   File
>> "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib.py",
>> line 207, in open
>>     return getattr(self, name)(url)
>>   File
>> "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib.py",
>> line 358, in open_http
>>     return self.http_error(url, fp, errcode, errmsg, headers)
>>   File
>> "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib.py",
>> line 371, in http_error
>>     result = method(url, fp, errcode, errmsg, headers)
>>   File
>> "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/intermine-1.00.00-py2.7.egg/intermine/results.py",
>> line 664, in http_error_404
>>     raise WebserviceError("Missing resource", errcode, errmsg, message)
>> intermine.errors.WebserviceError: ('Missing resource', 404, 'Not Found',
>> '[ERROR] 404 No template found called xml')
>> 
>> 
>> _______________________________________________
>> dev mailing list
>> dev at intermine.org
>> http://mail.intermine.org/cgi-bin/mailman/listinfo/dev
>> 





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