[InterMine Dev] Error found on running templates from the MyMine page

sergio contrino contrino at intermine.org
Mon Jun 24 09:24:49 BST 2019


hi paulo,
yes, there is a fix on this commit
c1bd944cdc8b24a8306df4f1b38f6ea4492e592e
on the dev branch of intermine.
please apply it to your checkout. we need to update the release branch.
thanks!
sergio

On 22/06/2019 17:40, Paulo Nuin wrote:
> Hi
> 
> We are having some errors on running templates/queries from the My Mine -> templates page. When clicking Run next to the template the error below appears on the screen and on catalina.out. If we click Edit and run the template from is edit page, it works without errors.
> 
> Any idea what is going on? This is a 2.x deployment.
> 
> Thanks
> 
> Paulo
> 
> 
> 
> ---- Error Found ----
> 
> java.lang.NullPointerExceptionat org.intermine.web.struts.TemplateAction.templateFormToTemplateValues(TemplateAction.java:371)at org.intermine.web.struts.TemplateAction.execute(TemplateAction.java:162)at org.apache.struts.action.RequestProcessor.processActionPerform(RequestProcessor.java:425)at org.apache.struts.action.RequestProcessor.process(RequestProcessor.java:228)at org.apache.struts.action.ActionServlet.process(ActionServlet.java:1913)at org.apache.struts.action.ActionServlet.doPost(ActionServlet.java:462)at javax.servlet.http.HttpServlet.service(HttpServlet.java:661)at javax.servlet.http.HttpServlet.service(HttpServlet.java:742)at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)at org.intermine.web.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:139)at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:198)at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:496)at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140)at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:81)at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:650)at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342)at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:803)at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:790)at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1459)at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)at java.lang.Thread.run(Thread.java:748)
> _______________________________________________
> dev mailing list
> dev at lists.intermine.org
> https://lists.intermine.org/mailman/listinfo/dev
> 

-- 
sergio contrino                  InterMine, University of Cambridge
https://sergiocontrino.github.io           http://www.intermine.org


More information about the dev mailing list