[flymine-announce] FlyMine release 3.0 now available
rachel at flymine.org
Tue, 20 Sep 2005 12:10:22 +0100
FlyMine new release
Version 3.0 of FlyMine is now available at www.flymine.org.
See the release notes at www.flymine.org/release-notes for full details
on new and updated data, bug fixes and new features.
The start page of FlyMine now has links to a series of 'aspects' which
are convenient starting points for the different types of data in
FlyMine - such as genomics, protein interactions and gene expression.
Each aspect lists relevant data sets in FlyMine, template queries and
suggested starting points for building queries.
-Microarray gene expression data - currently five experiments run at the
FlyChip facility are available.
-Protein domain and family information from InterPro.
-DrosDel deletion data (from www.drosdel.org.uk).
-D. melanogaster genes now have full name and wild type function set.
-FlyBase D. melanogaster genome annotation updated to release 4.2.
-D. melanogaster and C. elegans gene associations are now taken from
FlyBase and WormBase respectively.
-GOTerm entries now have a description, namespace ('biological_process',
'cellular_component' or 'molecular_function') and a collection of synonyms.
-Go annotaions have been updated to make it easier to query for evidence
codes and any related 'with' references.
FlyMine welcomes feedback. Please let us know if you spot any bugs, have
problems with any queries, or have any features or queries you would